The publications of Bioinformatics and Data mining Group


Yue JY, Lu XH, Zhang H, Ge J, Gao XL, Liu YS. Identification of conserved and novel microRNAs in blueberry. Frontiers in Plant Science, 2017, doi: 10.3389/fpls.2017.01155. [Abstract]  [Full paper]

Yue JY, Zhang DF, Ban RJ, Ma XJ, Chen DY, Li GW, Liu J, Wisniewski M, Droby S, Liu YS. PCPPI: a comprehensive database for the prediction of Penicillium-crop protein-protein interactions. Database (Oxford), 2017, doi: 10.1093/database/baw170. [Abstract]  [Full paper]  [Website]


Yue JY, Xu W, Ban RJ, Huang SX, Miao M, Tang XF, Liu GQ, Liu YS. PTIR: Predicted Tomato Interactome Resource. Scientific Reports, 2016, doi: 10.1038/srep25047. [Abstract]  [Full paper]  [Website]

Tang W, Zheng Y, Dong J, Yu J, Yue JY, Liu FF, Guo XH, Huang SX, Wisniewski M, Sun JQ, Niu XL, Ding J, Liu J, Fei ZJ, Liu YS. Comprehensive transcriptome profiling reveals long noncoding RNA expression and alternative splicing regulation during fruit development and ripening in kiwifruit (Actinidia chinensis). Frontiers in Plant Science, 2016, doi: [Abstract]  [Full paper]

杨潇怡, 隋媛, 唐晓凤, 曹徐绿, 岳俊阳, 刘永胜. ZmBK2L3在番茄果实中的特异表达及其功能研究. 合肥工业大学学报(自然科学版), 2016, doi: 10.3969/j.issn.1003-5060.2016.03.023.


Yue JY, Liu J, Ban RJ, Tang W, Deng L, Fei ZJ, Liu YS. Kiwifruit Information Resource (KIR): a comparative platform for kiwifruit genomics. Database (Oxford), 2015, doi: 10.1093/database/bav113. [Abstract]  [Full paper]  [Website]

Yue JY, Ma XJ, Ban RJ, Huang QL, Wang WJ, Liu J, Liu YS. FR database 1.0: a resource focused on fruit development and ripening. Database (Oxford), 2015, doi: 10.1093/database/bav002. [Abstract]  [Full paper]  [Website]

Zhu YY, Huang SX, Miao M, Tang XF, Yue JY, Wang WJ, Liu YS. Genome-wide identification, sequence characterization, and protein-protein interaction properties of DDB1 (damaged DNA binding protein-1)-binding WD40-repeat family members in Solanum lycopersicum. Planta, 2015, doi: 10.1007/s00425-015-2258-8. [Abstract]  [Full paper]


Yue JY, Wang WJ, Ban RJ, Zhu YY, Liu J, Liu YS. PAAS: Fast retrieval of plant amino acid substitutions and their effects on comparative phenomics. Plant Molecular Biology Reporter, 2014, doi: 10.1007/s11105-014-0777-2. [Abstract]  [Full paper]  [Website]


Huang SX, Ding J, Deng DJ, Tang W, Sun HH, Liu DY, Zhang L, Niu XL, Zhang X, Meng M, Yu JD, Liu J, Han Y, Shi W, Zhang DF, Cao SQ, Wei ZJ, Cui YL, Xia YH, Zeng HP, Bao K, Lin L, Min Y, Zhang H, Miao M, Tang XF, Zhu YY, Sui Y, Li GW, Sun HJ, Yue JY, Sun JQ, Liu FF, Zhou LQ, Lei L, Zheng XQ, Liu M, Huang L, Song J, Xu CH, Li JW, Ye KY, Zhong SL, Lu BR, He GH, Xiao FM, Wang HL, Zheng HK, Fei ZJ, Liu YS. Draft genome of the kiwifruit Actinidia chinensis. Nature Communications, 2013, doi: 10.1038/ncomms3640. [Abstract]  [Full paper]


Yue JY, Yu JC, Fang BS. Advances in directed evolution of genetic circuits. Journal of Biotechnology, 2008, doi: 10.1016/j.jbiotec.2008.07.082.