The publications of Bioinformatics and Data mining Group


Yue JY#, Zhu CX#, Zhou Y, Niu XL, Miao M, Tang XF, Chen FD, Zhao WP*, Liu YS*. Transcriptome analysis of differentially expressed unigenes involved in flavonoid biosynthesis during flower development of Chrysanthemum morifolium 'Chuju'. Scientific Reports, 2018, doi: 10.1038/s41598-018-31831-6. [Abstract]  [Full paper]

Zhang DF#, Yue JY#, Hua CY, Chen DY, Han Y, Liu YS*. Role of UV-damaged DNA-binding protein-1 (DDB1) in early response to Pseudomonas syringae pv. tomato DC3000 infection in tomato. Canadian Journal of Plant Pathology, 2018, doi: 10.1080/07060661.2018.1518930. [Abstract]  [Full paper]

卢晓慧, 朱志明, 岳俊阳*. 藏红花柱头小RNA高通量测序及生物信息学分析. 植物生理学报, 2018, doi: 10.13592/j.cnki.ppj.2017.0588.

Ren YB#, Miao M#, Meng Y#, Cao JS, Fan TT, Yue JY, Xiao FM, Liu YS*, Cao SQ*. DFR1-mediated inhibition of proline degradation pathway regulates drought and freezing tolerance in Arabidopsis. Cell Reports, 2018, doi: [Abstract]  [Full paper]

Gong XP#, Zhang ZL#, Yue JY#, Tang W, Tang XF, Zeng ZM, Niu XL, Chen DY, Sang XC, Xiao FM, He GH*, Liu YS*. Phenotypic characterization, fine Mapping, and altered expression profiling of roses1 mutation that affects organ size and water loss through regulating stomatal density in rice. Crop Science, 2018, 58: 1-21. [Abstract]  [Full paper]


Yue JY#, Lu XH#, Zhang H, Ge J, Gao XL*, Liu YS*. Identification of conserved and novel microRNAs in blueberry. Frontiers in Plant Science, 2017, doi: 10.3389/fpls.2017.01155. [Abstract]  [Full paper]

Yue JY#, Zhang DF#, Ban RJ#, Ma XJ, Chen DY, Li GW, Liu J, Wisniewski M, Droby S, Liu YS*. PCPPI: a comprehensive database for the prediction of Penicillium-crop protein-protein interactions. Database (Oxford), 2017, doi: 10.1093/database/baw170. [Abstract]  [Full paper]  [Website]


Yue JY#, Xu W#, Ban RJ#, Huang SX, Miao M, Tang XF, Liu GQ, Liu YS*. PTIR: Predicted Tomato Interactome Resource. Scientific Reports, 2016, doi: 10.1038/srep25047. [Abstract]  [Full paper]  [Website]

Tang W#, Zheng Y#, Dong J, Yu J, Yue JY, Liu FF, Guo XH, Huang SX, Wisniewski M, Sun JQ, Niu XL, Ding J, Liu J*, Fei ZJ, Liu YS*. Comprehensive transcriptome profiling reveals long noncoding RNA expression and alternative splicing regulation during fruit development and ripening in kiwifruit (Actinidia chinensis). Frontiers in Plant Science, 2016, doi: [Abstract]  [Full paper]

杨潇怡, 隋媛, 唐晓凤, 曹徐绿, 岳俊阳, 刘永胜*. ZmBK2L3在番茄果实中的特异表达及其功能研究. 合肥工业大学学报(自然科学版), 2016, doi: 10.3969/j.issn.1003-5060.2016.03.023.


Yue JY#, Liu J#, Ban RJ#, Tang W, Deng L, Fei ZJ, Liu YS*. Kiwifruit Information Resource (KIR): a comparative platform for kiwifruit genomics. Database (Oxford), 2015, doi: 10.1093/database/bav113. [Abstract]  [Full paper]  [Website]

Yue JY#, Ma XJ#, Ban RJ#, Huang QL, Wang WJ, Liu J, Liu YS*. FR database 1.0: a resource focused on fruit development and ripening. Database (Oxford), 2015, doi: 10.1093/database/bav002. [Abstract]  [Full paper]  [Website]

Zhu YY#, Huang SX#, Miao M, Tang XF, Yue JY, Wang WJ, Liu YS*. Genome-wide identification, sequence characterization, and protein-protein interaction properties of DDB1 (damaged DNA binding protein-1)-binding WD40-repeat family members in Solanum lycopersicum. Planta, 2015, doi: 10.1007/s00425-015-2258-8. [Abstract]  [Full paper]


Yue JY#, Wang WJ#, Ban RJ#, Zhu YY, Liu J, Liu YS*. PAAS: Fast retrieval of plant amino acid substitutions and their effects on comparative phenomics. Plant Molecular Biology Reporter, 2014, doi: 10.1007/s11105-014-0777-2. [Abstract]  [Full paper]  [Website]


Huang SX#, Ding J#, Deng DJ#, Tang W#, Sun HH#, Liu DY#, Zhang L#, Niu XL, Zhang X, Meng M, Yu JD, Liu J, Han Y, Shi W, Zhang DF, Cao SQ, Wei ZJ, Cui YL, Xia YH, Zeng HP, Bao K, Lin L, Min Y, Zhang H, Miao M, Tang XF, Zhu YY, Sui Y, Li GW, Sun HJ, Yue JY, Sun JQ, Liu FF, Zhou LQ, Lei L, Zheng XQ, Liu M, Huang L, Song J, Xu CH, Li JW, Ye KY, Zhong SL, Lu BR, He GH, Xiao FM, Wang HL, Zheng HK*, Fei ZJ*, Liu YS*. Draft genome of the kiwifruit Actinidia chinensis. Nature Communications, 2013, doi: 10.1038/ncomms3640. [Abstract]  [Full paper]


Yue JY#, Yu JC, Fang BS*. Advances in directed evolution of genetic circuits. Journal of Biotechnology, 2008, doi: 10.1016/j.jbiotec.2008.07.082.